Quickstart: Tabular Classification with the command line interface ------------------------------------------------------------------- NeurEco executable for Tabular models (Regression, Compression, Classification) is called NeurEcoDNN. It can be called directly from a terminal / powershell after a full installation of NeurEco. To build a NeurEco Regression model, run the following command in the terminal: .. code-block:: shell neurecoDNN build path/to/build/configuration/file/build.conf The skeleton of a configuration file required to build NeurEco Regression model, here build.conf, looks as follows (for the test case :std:ref:`RNA in quickstart`). Its fields should be filled according to the problem at hand. .. code-block:: javascript { "neurecoDNN_build": { "DevSettings": { "disconnect_inputs_if_possible": true, "final_learning": true, "initial_beta_reg": 0.1, "parameter_number_limit": 0, "valid_percentage": 33.33 }, "UserSettings": { "gpu_id": 0, "use_gpu": false }, "build_compress": false, "checkpoint_address": "./GeneExpressionCancerRnaSeq/GeneExpressionCancerRnaSeq.checkpoint", "classification": true, "exc_filenames": [ "x_train_0_.csv", "x_train_1_.csv" ], "freeze_structure": false, "input_normalization": { "normalize_per_feature": true, "scale_type": "auto", "shift_type": "auto" }, "model_output_format": "csv", "output_filenames": [ "y_train_0_.csv", "y_train_1_.csv" ], "output_normalization": { "normalize_per_feature": false, "scale_type": "none", "shift_type": "none" }, "resume": false, "starting_from_checkpoint_address": "", "starting_from_model_id": -1, "test_exc_filenames": [ "x_test.csv" ], "test_output_filenames": [ ".y_test.csv" ], "write_model_output_to_directory": "./GeneExpressionCancerRnaSeq/BuildingResults", "write_model_to": "./GeneExpressionCancerRnaSeq/GeneExpressionCancerRnaSeq.ednn" } } .. note:: For detailed documentation on **build**, see :std:ref:`Build NeurEco Classification model with the command line interface`. For data preparation, see :std:ref:`Data preparation for NeurEco Classification conf`. To perform an evaluation, run the following command in the terminal: .. code-block:: shell neurecoDNN evaluate path/to/evaluation/configuration/file/eval.conf The skeleton of an evaluation configuration file, here eval.conf, looks as follows (for the test case :std:ref:`RNA in quickstart`). Its fields should be filled according to the problem at hand. .. code-block:: javascript { "NeurEcoEvaluate": { "exc_filenames": [ "x_test.csv" ], "model_output_format": "csv", "neureco_filename": "GeneExpressionCancerRnaSeq/GeneExpressionCancerRnaSeq.ednn", "optional_output_reference": [ "y_test.csv" ], "write_model_output_to_directory": "GeneExpressionCancerRnaSeq/EvaluationResults" } } .. note:: For detailed documentation on **evaluate**, see :std:ref:`Evaluate NeurEco Classification model with the command line interface` To export the model to the chosen format, run one of the following commands: .. code-block:: shell neurecoDNN exportC ./GeneExpressionCancerRnaSeq/GeneExpressionCancerRnaSeq.ednn ./GeneExpressionCancerRnaSeqModel/GeneExpressionCancerRnaSeq.h double neurecoDNN exportONNX ./GeneExpressionCancerRnaSeq/GeneExpressionCancerRnaSeq.ednn ./GeneExpressionCancerRnaSeqModel/GeneExpressionCancerRnaSeq.onnx float16 neurecoDNN exportVBA ./GeneExpressionCancerRnaSeq/GeneExpressionCancerRnaSeq.ednn ./GeneExpressionCancerRnaSeqModel/GeneExpressionCancerRnaSeq.onnx float neurecoDNN exportFMU ./GeneExpressionCancerRnaSeq/GeneExpressionCancerRnaSeq.ednn ./GeneExpressionCancerRnaSeqModel/GeneExpressionCancerRnaSeq.fmu Export to these formats requires *embed* license. .. note:: For detailed documentation on Tabular Classification with the command line interface, see :std:ref:`Tabular Classification with a configuration file`.